I wondered if Keyboard Maestro will be affected by the System Integrity Protection in El Capitan?
It’s working so far on my El Capitan Mac Mini. Though, I have not tested all of the functionality. Just the ones I have been using the most.
Wiki: Is Keyboard Maestro compatible with El Capitan?
Written 2015-07-27, while El Capitan is still in beta testing.
Yes, Keyboard Maestro is, for all practical purposes, fully compatible with El Capitan as far as we are aware.
Keyboard Maestro does not install anything on your harddisk, and uses public APIs, so the security measures added to OS X in El Capitan do not affect Keyboard Maestro's facilities.
Many hundreds of people are using Keyboard Maestro on the beta of El Capitan, and the only issue we are currently aware of is a drawing issue with the Clipboard History Switcher window. We are hoping the Apple will resolve this bug before the release of El Capitan, but even if they do not it should be a straightforward fix to Keyboard Maestro to work around whatever drawing issue is involved.
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Thanks m